OptimusKG
Graph Schema

Graph Schema

The structure of the OptimusKG knowledge graph.

OptimusKG is a biomedical Labeled Property Graph containing 10 node types and 26 edge types. The schema is defined in conf/base/biocypher/schema_config.yaml and drives the gold layer export via BioCypher.

Overview

Each release includes a comprehensive graph report with:

  • Overview: Total elements, non-null properties, node count, edge count
  • Node metrics by type: Count, percentage, average properties, average degree
  • Edge metrics by type: Count, percentage, average properties
  • Graph topology: Directed, undirected, bi-directional, duplicated, and loop edges

Node Types

Edge Types

Export Formats

Gene Names

HGNC gene nomenclature and identifiers.

Node Types

The 10 entity types in the OptimusKG knowledge graph.

On this page

Overview